Old Databases

Databases here are built for Metabuli v1.0.0 to v1.1.1. Download them from here. Spaced k-mers and reduced amino acid alphabet are not used in these databases.

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Available Databases

refseq_virus

• NCBI RefSeq release 223 virus genomes + human genome (T2T-CHM13v2.0)
• Size: 8.1 GB
• Download link

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refseq_prokaryote_virus

• RefSeq prokaryote genomes (Complete Genome/Chromosome, 2024-03-26) + RefSeq Virus + human genome (T2T-CHM13v2.0)
• Size: 115.6 GB
• Download link

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refseq_release

• Viral and prokaryotic genomes of RefSeq release 224 + human genome (T2T-CHM13v2.0)
• Size: 619 GB
• Download link

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gtdb+virus+human

• HQ GTDB R220 genomes (Complete Genome/Chromosome, CheckM completeness > 90%, contamination < 5%)
• RefSeq Virus (2025-03-07) + human genome (T2T-CHM13v2.0)
• Prokaryotes follow GTDB taxonomy, viruses and human follow NCBI taxonomy
• Size: 117 GB
• Download link

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gtdb

• HQ GTDB R214.1 genomes (Complete Genome/Chromosome, CheckM completeness > 90%, contamination < 5%) + human genome (T2T-CHM13v2.0)
• Size: 101 GB
• Download link

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gtdb226db

• GTDB R226 species representative genomes with CheckM2 completeness > 70% and contamination < 5%
• Size: 453 GB
• build options: --syncmer 1 --smer-len 5
• Download link